Arnellos, A., & Moreno, A. (2012). How Functional Differentiation Originated in Prebiotic Evolution, Ludus Vitalis XX, num 37 (in press).

Arnellos, A., Bruni E., L., El-Hani C. & Collier, J. (2012). Anticipatory Functions, Digital-Analog forms and Biosemiotics: Integrating the tools to model Information and Normativity in Autonomous Biological Agents, Biosemiotics 5 (3), in press.

Xenakis, I., Arnellos, A., Spyrou, T. & Darzentas, J. Modelling the Aesthetic Judgement: an Interactive-semiotic Perspective, Cybernetics & Human Knowing, (forthcoming).

Arnellos, A., Lekkas, D. Zissis, D. Spyrou, T., & Darzentas, J. (2011) Fair Digital Signing: The Structural Reliability of Signed Documents, Computers & Security, (30), 580-596, dx.doi.org/10.1016/j.cose.2011.09.001

Arnellos, A., Spyrou T., & Darzentas J. (2008). Emergence and Downward Causation in Contemporary Artificial Agents: Implications for their Autonomy and Some Design Guidelines, Cybernetics and Human Knowing, Vol. 15, No 3-4, pp. 15-41.

Arnellos A., Spyrou T., & Darzentas J. (2008). Meaning needs functional emergence: Shedding novel light into difficult problems, Cybernetics and Human Knowing, Vol. 15, No 3-4, pp. 50-56.

Neuman Y., Arnellos A., & Nave O. (2008). Sign-Mediated Concept Formation, American Journal of Semiotics, Vol. 24, No. 1-3, pp. 107-133.

Arnellos A., Spyrou, T., & Darzentas, J. (2007). Cybernetic Embodiment and the Role of Autonomy in the Design Process, Kybernetes, Vol. 36 No. 9/10, pp. 1207 – 1224, doi:10.1108/03684920710827247

Arnellos A., Spyrou, T., & Darzentas, J. (2007). Exploring Creativity in the Design Process: A Systems-semiotic Perspective, Cybernetics and Human Knowing, Vol. 14, No.1, pp.37-64.

El-Hani C. N., Arnellos, A., & Queiroz, J. (2007). Modelling a Semiotic Process in the Immune System: Signal Transduction in B-Cell Activation, Triple-C Cognition, Communication, Cooperation, Vol. 5, No. 2, pp. 24-36.

Arnellos A., Spyrou, T., & Darzentas, J. (2006). Dynamic Interactions in Artificial Environments: Causal and Non-Causal Aspects for the Emergence of Meaning, Journal of Systemics, Cybernetics and Informatics, ISSN: 1690-4524, Vol.3, No.1, pp. 82-89. [Best paper in the Systemics and Information session of the 8th World Multi-Conference in Systemics, Cybernetics and Informatics, Orlando, Florida, 2004].

Arnellos A., Vosinakis. S, Spyrou, T., & Darzentas J. (2006) The Emergence of Autonomous Representations in Artificial Agents, Journal of Computers, (JCP) ISSN: 1796-203X Vol. 1 No. 6, pp. 29-36.

Arnellos A., Lekkas D., Spyrou T., & Darzentas J. (2005). "A Framework for the Analysis of the Reliability of Digital Signatures for Secure E-commerce", The electronic Journal for e-commerce Tools & Applications (eJETA), Vol.1, No.4, 2005.

Velasco, C.A., Mohamad Y., GilmanA. S., Viorres, N., Vlachogiannis, E., Arnellos, A., & Darzentas, J. S (2004). The Need for User Information and its Relationship to Device Profiles, Universal Access in the Information Society (UAIS), special issue on Guidelines, Standards, Methods and Processes for Software Accessibility, (3), 88-95, doi: 10.1007/s10209-003-0075-5.

John Darzentas, George A. Vouros, Spyros Vosinakis, Argyris Arnellos (Eds.) (2008) Artificial Intelligence: Theories, Models and Applications, Lecture Notes in Artificial Intelligence, LNAI 5138, Springer.

Arnellos, A., & Moreno, A. (2011). An Organizational Account of Function with a Focus on Functional Differentiation, ISI 2011, Syros, Greece, July, 29-31, 2011.

Xenakis, I., Arnellos A., & Darzentas, J. (2011) Emotions and their Functional Role in Aesthetic Judgment, ISI 2011, Syros, Greece, July, 29-31, 2011.

Arnellos, A. (2009) Naturalising Autonomy - On the neurobiological grounding of emotions. In Kazimierz Naturalised Epistemology Workshop (KNEW09), Kazimierz Dolny, Poland, September 4-8, 2009.

Arnellos, A., Bruni, L. El-Hani, Ch. & Collier, J. Emergent Representations, Digital-Analog forms and Biosemiotics: Integrating the tools to model complex phenomena in living organisms. In The 9th Annual Gatherings in Biosemiotics, Prague, 30 June – 5 July, 2009.

Peponi, K., Arnellos, A., Spyrou, T., & Darzentas, J. A new way of classifying and comparing systemic methodologies. In the 23rd European Conference on Operational Research, EURO XXIII, Bonn, July 5-8, 2009.

Peponi K., Arnellos, A. Spyrou, T. & Darzentas, J. Analysis and comparison of systemic methodologies for organisational design. In the 5th National & International Conference of the Hellenic Society for Systemic Studies: From Systems Thinking to Systems Design & Systems Practice, Xanthi, Greece June 24-27, 2009.

Arnellos, A., Vosinakis, S., Anastasakis, G., & Darzentas, J. (2008). Autonomy in Virtual Agents: Integrating Perception and Action on Grounded Representations, in John Darzentas, George A. Vouros, Spyros Vosinakis, Argyris Arnellos (Eds.) Artificial Intelligence: Theories, Models and Applications, LNAI 5138, (Oct 2008) pp. 51-63.

Arnellos, A.,  El-Hani, Ch., Vosinakis, S., Queiroz, J., & Darzentas, J. (2008). A Biosemiotic Modeling of Signal Transduction in the B-cells Activation: Implications for Simulation Methods, in the 8th International Conference in BiosemioticsHermoupolis, Syros, Greece 2008.

Arnellos, A., Vosinakis Sp., Spyrou T., & Darzentas J., (2006). Towards Representational Autonomy of Agents in Artificial Environments, SETN06, Lectures Notes in Artificial Intelligence, (LNAI 3955 – Advances in Artificial Intelligence), Springer-Verlag, 2006.

Arnellos A., Spyrou T., & Darzentas J., (2005) The Emergence of Interactive Meaning Processes in Autonomous Systems, In: Proceedings of FIS 2005: Third International Conference on the Foundations of Information Science. Paris, July 4-7, 2005.

Arnellos, A., & Vosinakis Sp. (2005) Emergence of Representational Structures in Virtual Agents. IVA 2005: Lecture Notes in Artificial Intelligence (LNAI), 504, Springer-Verlag.

Lekkas, D., Arnellos, A., Spyrou, T., & Darzentas, J. (2005). Pervasive Digital Signatures: Syntactic robustness and simplicity of signed documents, In Proceedings of SecPerU'05, Security, Privacy and Trust in Pervasive and Ubiquitous Computing, Santorini, Greece, IEEE, (July 2005) pp. 21-28.

Arnellos, A., Spyrou T., & Darzentas J. (2005). A Framework Supporting Creativity in the Design Process: A Systems-theoretic Perspective, The 6th International Conference of the European Academy of Design (EAD06), March 29-31 2005, University of the Arts, Bremen, Germany.

Vlachogiannis, E., Darzentas, J. S., Arnellos, A., Spyrou, T., & Darzentas, J. (2005). The accessibility of web applications: the case of portals and portlets, HCI Internationcal 2005, HCII2005, Las Vegas, 2005.

Arnellos, A., Spyrou, T., & Darzentas, J. (2004). Dynamic Interactions in Artificial Environments: Causal and Non-Causal Aspects for the Emergence of Meaning, the 8th World Multi-Conference in Systemics, Cybernetics and Informatics, Orlando, Florida, 2004 – Best paper award.

Arnellos A., Spyrou T., & Darzentas J., (2004). Analysis of the design of a framework supporting meaning processes in living and artificial systems The 48th Annual Conf. of the Int. Society for the Systems Sciences (ISSS), Monterey, CA, USA

Arnellos, A., Spyrou, T., & Darzentas, J. Extending Artificial Agency to Incorporate Ethics-oriented Social Interaction. In Terrell Ward Bynum, Nancy Pouloudi, Simon Rogerson and Thomas Spyrou (Eds.) The Seventh ETHICOMP International Conference on the Social and Ethical Impacts of Information and Communication Technologies, Syros, Greece 14-16 April 2004, pp. 51-65.

Arnellos, A., Spyrou, T. & Darzentas, J. (2003). Towards a Framework that Models the Emergence of Meaning Structures in Purposeful Communication Environments. In Wilby, J. Allen, K.A. (Eds) The 47th Annual Conf. of the Int. Society for the Systems Sciences (ISSS) 3 (103).

Viorres, N., Koutsabasis, P., Arnellos, A., Darzentas J S, Velasco C A, Mohamad Y, Spyrou, T., & Darzentas, J. (2003). An approach for personalisation and content adaptation for accessible Internet Services based on user and device profiles in Julie Jacko, Constantine Stephanidis (Eds), Universal Access in HCI, Inclusive Design in the Information Society (Volume 4, Proceedings of the 2nd International Conference on Universal Access in Human - Computer Interaction, 22—27 June, Crete, Greece) S. 637—641. New Jersey: Lawrence Erlbaum Associates, 2003.

Spyrou T., Vlachogiannis E., Arnellos A., & Darzentas J. (2003). Towards a framework for creating design support environments for adaptive systems, in Julie Jacko, Constantine Stephanidis (Eds), Human Computer Interaction: Theory and Practice, Lawrence Erlbaum Associates, HCII2003, Crete, Greece, 2003.

Darzentas, J., Arnellos, A., Darzentas, J. S., Koutsabasis, P., Spyrou, T., Viorres, N., Vlachogiannis, E., Velasco, C. A., Mohamad, Y., Abascal, J., Guerra, J. T.,  Myriam, M. A., Tsopelas, N., Floratos, N. (2003). IRIS: An Open Environment that Supports Inclusive Design of Internet Applications. In M. Rauterberg et al (Eds). International Conference on Human-Computer Interaction, INTERACT, 749-752, Zurich.

Zissis, D. Dimitris L., Arnellos, A. (2012). A systems theory approach to electronic voting complexity, in Aroon Manoharan and Marc Holzer (Eds.) E-Governance and Civic Engagement: Factors and Determinants of E-Democracy, pp. 128-151, doi:10.4018/978-1-4666-0116-1.ch007

Arnellos, A., Spyrou, T., Darzentas, J., (2010). Naturalising the Design Process: Autonomy and Interaction as the Core Features, in 'Beyond Description: Normativity in Naturalised Philosophy', (Eds.) Marcin Milkowski and Konrad Talmont-Kaminski, Texts in Philosophy, Vol. 13, pp. 265-288, College Publications.

Brands, M., Arnellos, A., Spyrou, T. and Darzentas, J. (2007). A Biosemiotic Analysis of Serotonin’s Complex Functionality, in Guenther Witzany (ed.) 'Biosemiotics in Transdisciplinary Contexts pp. 125-132, Umweb, Helsinki.

Arnellos A., (2007). Exploring the Role of Meaning in the Design Processes in Living Systems and Artificial Environments, PhD Thesis, Department of Product and Systems Design Engineering, University of the Aegean (in greek).

Arnellos A., (2000). Video Traffic Modelling and Performance Issues Related to ATM Networks Carrying Multiplexed Video Streams, MSc Thesis, Department of Electronics & Computer Engineering, Brunel University.